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The Art of Molecular Dynamics Simulation, Second Edition by D. C. Rapaport

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Function index

[The references are to section numbers.]

AccumBondAngDistn, 10.5

AccumDiffusion, 5.3, 8.4

AccumDihedAngDistn, 10.5

AccumProps, 2.4, 7.3, 7.4, 11.6, 13.2

AccumSpacetimeCorr, 5.4

AccumVacf, 5.3

AddBondedPair, 4.5

AdjustDipole, 13.2

AdjustInitTemp, 3.6

AdjustLinkAngles, 11.6

AdjustPressure, 6.3

AdjustQuat, 8.2

AdjustTemp, 3.6, 6.3, 8.2, 8.5, 11.6

AllocArrays, 2.4, 3.4, 3.8, 4.3, 4.4, 4.5, 5.3, 5.4, 6.2, 7.3, 8.3, 8.4, 10.3, 11.6, 12.2, 13.2, 13.3, 13.5, 14.2, 14.4, 17.4, 17.5, 17.6

AnalClusterSize, 4.5

AnalVorPoly, 4.4

AnlzConstraintDevs, 10.3

ApplyBarostat, 6.3

ApplyBoundaryCond, 2.4, 6.2, 7.3, 7.4

ApplyThermostat, 6.3, 7.4, 8.2, 8.5

ApplyWallBoundaryCond, 12.3

AssignToChain, 9.3

BisectPlane, 4.4

BuildClusters, 4.5, 9.6

BuildConstraintMatrix ...

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