Index
Algorithm
C3NET
clique percolation
clustering
clustering and community
community detection
dense cluster enumeration
divisive and greedy
enumeration
Floyd–Warshall
Girvan–Newman
Google's PageRank
Graph clustering
Inference
Kernighan–Lin
Kuhn–Munkres assignment algorithm (also called Hungarian algorithm)
machine learning
Nelder Meade simplex search
network inference
network reconstruction
optimization
reverse search
spectral bisection
stochastic
subgraph enumeration
Alzheimer's disease
differential expression
histone deacetylase 1 (HDAC1)
information synergy
microarray dataset (GSE5281)
pathophysiology
pathways
synergy scores of gene pairs
Bio-and chemoinformatics
ligand-based virtual screening
quantitative structure–property relationships
structure-activity relationship
Complexity
arbitrary
components of
computational
conventional
levels of
network
of biological system
of Boolean networks
of counting problems
of modulatory maps
of the algorithm
of the clique percolation method
of the method
overall
pyramid
space
stochastic
structural
Computational systems biology
Database(s)
database for annotation, visualization and integrated discovery (DAVID)
Database of Interacting Proteins (DIP)
Kyoto Encyclopedia of Genes and Genomes (KEGG)
Dimensionality
curse of
high
reduction of
Entropy
network
Shannon
Gene expression
Genetics
molecular
Graph
acyclic
bipartite
Chinese
clustering
collaborative (cGraph)
comparison
complete
directed
empty
entropy
Erdös–Rènyi
Global structure
