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Bioinformatics with R Cookbook by Paurush Praveen Sinha

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Appendix B. Useful R Packages

The following are some of the useful R libraries and their applications. There are some packages that are interesting for bioinformatics but in the presented recipes, they were not needed and hence the corresponding chapter numbers are not a part of the following table:

Library name

Application

Repository

Chapter

ade4

A package for multivariate data analysis.

CRAN

 

affy

This bears the functions for the exploratory analysis of Affymetrix Oligonucleotide Array.

Bioconductor

5

ALL

This is a data package with data for T and B cell acute lymphocytic leukemia from the Ritz Laboratory at the DFCI.

Bioconductor

5

annotate

This package provides interface functions to support user actions that rely on the different ...

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