Bioinformatics with Python Cookbook - Second Edition

Using the Protein Data Bank

In this chapter, we will cover the following recipes:

• Finding a protein in multiple databases
• Introducing Bio.PDB
• Extracting more information from a PDB file
• Computing molecular distances on a PDB file
• Performing geometric operations
• Animating with PyMOL
• Parsing the mmCIF files with Biopython