Traversing genome annotations

Having a genome sequence is interesting, but we will want to extract features from it, such as genes, exons, and coding sequences. This type of annotation information is made available in Generic Feature Format (GFF) and General Transfer Format (GTF) files. In this recipe, we will look at how to parse and analyze GFF files, using the annotation of the Anopheles gambiae genome as an example.

Get Bioinformatics with Python Cookbook - Second Edition now with the O’Reilly learning platform.

O’Reilly members experience books, live events, courses curated by job role, and more from O’Reilly and nearly 200 top publishers.