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Beginning Perl for Bioinformatics by James Tisdall

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PDB Files

Here's a section of an actual PDB file:

HEADER SUGAR BINDING PROTEIN 03-MAR-99 1C1F TITLE LIGAND-FREE CONGERIN I COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONGERIN I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE-RECOGNITION-DOMAIN; COMPND 5 BIOLOGICAL_UNIT: HOMODIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CONGER MYRIASTER; SOURCE 3 ORGANISM_COMMON: CONGER EEL; SOURCE 4 TISSUE: SKIN MUCUS; SOURCE 5 SECRETION: NON-CLASSICAL KEYWDS GALECTIN, LECTIN, BETA-GALACTOSE-BINDING, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.SHIRAI,C.MITSUYAMA,Y.NIWA,Y.MATSUI,H.HOTTA,T.YAMANE, AUTHOR 2 H.KAMIYA,C.ISHII,T.OGAWA,K.MURAMOTO REVDAT 2 14-OCT-99 1C1F 1 SEQADV HEADER REVDAT 1 08-OCT-99 1C1F 0 JRNL AUTH T.SHIRAI,C.MITSUYAMA,Y.NIWA,Y.MATSUI,H.HOTTA, JRNL AUTH 2 T.YAMANE,H.KAMIYA,C.ISHII,T.OGAWA,K.MURAMOTO JRNL TITL HIGH-RESOLUTION STRUCTURE OF CONGER EEL GALECTIN, JRNL TITL 2 CONGERIN I, IN LACTOSE- LIGANDED AND LIGAND-FREE JRNL TITL 3 FORMS: EMERGENCE OF A NEW STRUCTURE CLASS BY JRNL TITL 4 ACCELERATED EVOLUTION JRNL REF STRUCTURE (LONDON) V. 7 1223 1999 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126 2005 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.6 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK ...

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